CodY regulon supp Figs - PLOS

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Showing restriction enzymes cutting maximum 1 time [using RELibrary as a Restriction Enzyme Library]. ###. >-35. >CodY Box 5 mm.
-- Restriction map of LMRG_00251 Showing restriction enzymes cutting maximum 1 time [using RELibrary as a Restriction Enzyme Library] ###

A

hisZ (LMRG_00251)

>-35 >CodY Box 5 mm | | ATTCAACCCTCTTTCAAAATTCTTTTTCCCAAGTGCTTTAAATGGTACACTAATTATACCATAAGCAACTATTTTTCTATTCATTATTTACAAAAACGCT

< 100

>-10 | TTAACGTGCTAATATGCTAATAAACTAAAATATCGTAAAGGAGCTAACCAGATGAACTTAAATAAGAACTTACCAACTGGAACACGTGATAAACTTTTTC

< 200

>LMRG_00251 | GTGAAGCACGAGCTGCATACAAAATTGAGCAACAAGTGAATCATTATTTT

< 250

-- Features : map of LMRG_02317 Restriction LMRG_00251 : [152 : 250] Showing restriction enzymes cutting maximum 1 time [using RELibrary as a Restriction Enzyme Library] CodY Box 5 mm : [71 : 85] ### -10 : [107 : 115] -35 : [87 : 92] >-35 | GAAGAAGTGAAGACGTACCTCATTCTTTAGAGAGCATTTACTGGTGAGTAAACGTATTTAAAGAGTGGAGCGTTTTTATTTTTGAATGTTTTAATTTTAT

< 100

>-10 >CodY Box 4 mm | | TAGTTAGGGTAAAATCGACAGTATACTTAAAATTAGATGGGGTGAAGTGATGAATATTAGTATAGAAATAAAAGAACGTGATACTGACCACATAGACATA

< 200

B

rbsV (LMRG_02317) first gene in sigB operon

>LMRG_02317 [*] | TTTGTTGCTGGGGAGATCGATGCTTATACAGCGCCAAAGGTAAAAGAAGCATTAGAAGTATATCAAGTTAAAGAGGG

< 277

Features : LMRG_02317 [*] V2.5> : [150 : 277] -10 >-35 >CodY Box 4 mm | | | AACCGTCACTTGTGGCGGTTTTTTTGTGTTTTCATCTTTGTGAATTAATTTTGATTTCTTTTAAAATTGGTTATAACTCTCGCGAATTGGGGTAAAAGTA

< 100

AAGAGGCAGATGAAGATACATTGTGAAAAATTGATATGATAGGACAAGTCGTTTGATTGACAGCGTTTTCTTGATATGATTAAATAGACTCAAGTTAATT

< 200

AACATGTCAGGAGAAGAGATGACAATCGAAACGATGCAAGGGTACTAGTGTGCCTACGTTTTGATTGTCATTCTTTTTTTGAAGTTAATTGATAATCGGA

< 300

ATGTAAGGGGACTAGTAAGTGTTAAAATTCCGGTGCTACAAATAAGCAAGAAGAAGGAGTTGGAAAAGATGATTGACACAAGTTTAGCAACACAATTTCT

< 400

>LMRG_01431 | AGGTGAAGTCATTGGTACGGCTATACTAATTATTTTAGGTGCTGGTGTCGTAGCAGGTGTTTCACTGAAAAGATCCAAAGCAGAGAATG

< 489

-- Restriction map of LMRG_01241 Showing restriction enzymes cutting maximum 1 time [using RELibrary as a Restriction Enzyme Library] ###

D

argG (LMRG_01241)

ATTCGCTCAACTCCTTCAATATAACTTCAATAACAAGTATAGCAGTTTTATGAACAGGAACCAATTTATTACTATTTGAAATGATTATTTTTATTTAGAA

< 100

>CodY Box 5 mm >-35 >-10 | | | ATGTATTTTTAAGCATAATTATGAATAAATGAAAATAAAAAGGTTGATATCTAAAAGCATCGATGTTAATATAAATACAAATGTTTGTATATTTATGAAT

< 200

>LMRG_01241 | AGGGGATGTTTAAAATGGCGAAAGAAAAAATCGTATTAGCTTACTCAGGTGGGTTAGATACTTCTGTGGCAATTCAGTGGTTAGTAGAATCAGGTTATGA

< 300

-- Restriction map of< LMRG_01480.xdna AGTTATTGCATGTT 314 Showing restriction enzymes cutting maximum 1 time [using RELibrary as a Restriction Enzyme Library] ###

gadC (LMRG_01480)

: EFeatures LMRG_01241

>-35 >-10 | | : [215 : 314] -10CATTAAATCCTCCCTCTTCCCATTATTACCTTTCAATATCCTTAATGGACATTTAACATCTATATACAATACACCCATTTTTTTTAAAGTGCAAGAGTTT : [164 : 172] -35 : [144 : 149] CodY Box 5 mm : [117 : 130]

< 100

TTTACTAAAAATGGAAAAAAATTTAATGAATGCGTTTGCTGCGAATAGAACAACTATAAGCATTGTCTCAAAAATTTTTCCTGGCTAAGAAAAAAACTGG

< 200

>CodY Box 4 mm | AATAATTTTCGAAAACAAACGTGCTAATCTTATACATGTTCCAACAAACAATTACTTAGGAGGTGCTTTTCTCGTGTTAACTGATGATGTTCCAAAAAAA

< 300

TCACATTTACCATTAATTAAGCATCATTCTAATTACTTATAGCTTCGTTTAGTTGTATTTTCGCAAACAAAAAATTGGGAGGTAACATACAATGTCTAAA

< 400

>gadC (LMRG_01480) | -- CAAGCAAAGTCTTTAACCTTATTCGGATTTTTCGCCATCACGGCTTCCATGGTTATGACCGTTTATGAATATCCAACATTTGCCACTTCCG < 491 Restriction map of LMRG_01257 Showing restriction enzymes cutting maximum 1 time [using RELibrary as a Restriction Enzyme Library] ### Features : gadC (LMRG_01480) : [392 : 491] -10 : [62 : 70] GTTAATTGCCTCCATTAATATACATATTATAGTTACCATTTTACTATAAAAAAGAACAACTTGACAGAAAAAAAGTGATTAAAAACAGCTCCAGCACTTA -35 : [42 : 47] CodY Box 4 mm : [204 : 218]

F

feoA (LMRG_01257)

< 100

TTTCCGTGTATCAATACAGAGGTAAAAAGGCATGCCACTTAGGCAAAAGACGGCTATGCTCTTAAGAAATTTTTTTGCTGTTATACCCTACTATTTTGCT

< 200

>-35 >CodY Box 5 mm >-10 | | | ATTCTAACAGCAATTTCAAAAAAACACTTCATATTAAGGTCTGTTCGTGATAAAATGAACATAGTTGATAATGATTATCATGTTCATTACATAACATAAA

< 300

>CodY Box 5 mm >LMRG_01257 | | AGGAGGCCTGCTAGCTTATGCAATTAAATGAAACTGCTGTCGGTGAAAAAGTTCGCATCTCAGAATTAAAAATTGAGAACGCTATGCTTAAACGTCGCTT

< 400

ACTTGCACTTGGTTGCGATGAAGGTTGTGATATTTGTATCAAACAAAAAGGACTATTTGGTG

< 462

-- Restriction map of LMRG_02626 Showing restriction enzymes cutting maximum 1 time [using RELibrary as a Restriction Enzyme Library] ###

G

actA (LMRG_02626)

>-35 >CodY Box 4 mm >-10 | | | TTAACAAATGTTAGAGAAAAATTAATTCTCCAAGTGATATTCTTAAAATAATTCATGAATATTTTTTCTTATATTAGCTAATTAAGAAGATAATTAACTG

< 100

>CodY Box 4 mm | CTAATCCAATTTTTAACGGAATAAATTAGTGAAAATGAAGGCCGAATTTTCCTTGTTCTAAAAAGGTTGTATTAGCGTATCACGAGGAGGGAGTATAAGT

< 200

>LMRG_02626 | GGGATTAAATAGATTTATGCGTGCGATGATGGTAGTTTTCATTACTGCCAACTGCATTACGATTAACCCCGACATAATATTTGCAGCGACAGATA

< 295

-- Restriction map of LMRG_00242 Showing enzymes cutting maximum 1 time [using RELibrary as a Restriction Enzyme Library] Featuresrestriction : ### LMRG_02626 : [199 : 295] CodY Box 4 mm : [36 : 50] >CodY box 3 mm >-35 CodY Box 4 mm : [123 : 137] | | -10 : [67 : 75] CTTCTATATCTACTCATTAAAACCTAAGCAAACGTTCTCATTAACTACATTTTAAAAAATTTCAGAAAAATTGGTTTTTATGCTTGAAAATATTCTCAAC -35 : [43 : 48]

< 100

>-10 | AATGTGTAAACTAACAACATAGGTAAGAAAAGTTGACCAAATTTCAGAAAAATTTACTTAACGCACACAAGCCAATGTTTTTCTTCTTTATAACATTGCA

< 200

TGTATTTGCGTCAGGTTTTCTACTTTTCCTTATAGTCAAAATATTTAAACAAGGAGCGATTATAGTATGGCACAAACATCCACTATCCAAAACGACACAA

< 300

H

gdhA (LMRG_00242)

>LMRG_00242 | AGGCAGCCGAAGAATACGCAGCTCGAGTGTTTGAAACAATTAAACAACGGAATCCTGGCGAAACGGAATTCCACCAAGCAGTTGAAGAATTCTTAAACTC < 400

TGTTATCCCAGCCCTTGCAAAAGAACCTAAATACGAAGCAAATGGCATTTTAGAACAGTTAACAGAACCCGAACGCCTTATCAGTTTCCGAGTTCCATGG

< 500

< -16:32> GTGGATGATTCTGGCA 516-35 >-10 LMRG_00242 : [267 : 516] | | CodY box 3 mm : [57 : 72] < 100 -10TATAATTCTCCTTTAATAGTTTAATGTTGGTTAAACTAGCTGAAGGATTGAAGAGTTTATTTCACTCTTACTTTCTAAACAATCCTAAAGCCATTGTTAG : [104 : 112] -35 : [84 : 89] >CodY box 4 mm | AAAGTCGAGAGCAGTGCAATTTTGTTTGCATCTCTTTGATCACCACCTTGCCTTCATTATAAGCACTTCTGAATTGTTCGTCAATTCTCTTTTATGAATA < 200

I

poxB (LMRG_00411)

CTCTTCTAAAAACAGGGTAAACGAAAACTATTGGACATTAGAGAAAACATCCATGGGAGGAGAAAGTAAAATGAAAAAAGTAAAAGCAAGTGAAACACTC >LMRG_00411 | GTACAAACATTAAAAAATTGGGGTATCGACCACGTATATGGCTTGCCCGGCGATTCGATTGACACCGTAGTTGACGCTTTACGAAAAGAAC

< 391

< 300

J

-- Restriction map of LMRG-00748 Showing restriction enzymes cutting maximum 1 time [using RELibrary as a Restriction Enzyme Library] ###

glnR (LMRG_00748)

>CodY Box 4 mm | AAAAGTAACATTTATTTTTCAGAAAAAATTTTTTAATTTTTACCGCGATGGATTCATTCGCGGTTTTTTTGTATGTAATGCATTGGTATATAAGGCTTTA

< 100

>-35 >-10 | | TCTATAATGTTAGATTATCTAACATAAATTTGACAAAACATCTAACGTACATTATAATGCTACTATCATCAAAAAAATAATTATGTTTTGAGGGGGAATT

< 200

>LMRG_00748 | GTCGTGAGCGAAAAGGAAATCCGGAGATCGATGCCGCTTTTTCCAATTGGGCCTGTGATGAAGCTAACTGATCTCACTGCTAGACAAATTCGCTACTATG

< 300

< 300 -- Restriction map of LMRG_02874 Showing restriction enzymes cutting maximum 1 time [using RELibrary as a Restriction Enzyme Library] ### Features : LMRG_00748 : [204 : 300] >CodY Box 4 mm CodY Box 4 mm : [14 : 28] | -10 : [150 : 158] ACAATCACATATCTCTCTATCCTATAGTATTATTGATTTTCTGTTTATTTTTATAATAACAATATATGTTAGTTGTGTAAAGGGAACGCGAGTAGGTCAA -35 : [130 : 135]

< 100

AAGGATTGGGTATGAAGAACCTTTTTTTGAGTTAAATAGAAAAATATAAATCGAATAATGAGAAGTTTTCCTTTGATACAGCTGTTACACTGGCTGTTTT

< 200

>-35 >-10 | | TTTATTTTTACACACAATTTCATTTTTTAAAAAAAGTATAGATTTTTTCTGGATTTGGTGTAAAATTTTATATTGCAGTTACAAAAAACACTTTATTGAT

< 300

>CodY Box 4 mm | ATATATTTTGAAAAAATGATTTATTTTTGTAATCTGATGAAGGGAGTGAAAGGTGAATTTACCTTACTTGAATGGAATATTTTTTGTCACTTTTAAAAAT

< 400

>LMRG_02874 | TATTGTACTTTTGGCAGTACTTGCGGGAATTTCTTATTTTTTAGTTAAGAAAAACAAGCAAGCGAATCGCACGAGAAAAAGCGAAAATGATCTAATAAAG

< 500

K

fliN (LMRG_02874)

< 500

Features : LMRG_02874 CodY Box 4 mm CodY Box 4 mm -10 -35

: : : : :

[372 : 500] [35 : 49] [304 : 318] [224 : 232] [207 : 212]