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Fig S4 Tess - PLOS
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Fig S4 Tess - PLOS
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0.0. 0.1. 0.2. 0.3. 0.4 net-
diversification rates
million years ago rate. 80. 60. 40. 20. 0. 0.0. 0.5. 1.0. 1.5. 2.0. 2.5 relative-extinction rates million years ago rate. 80.
0
0
0.8 0.6 0.4 0.2
40
20
20
1
0.8
0.4
60
40
20
20
0
0.4
0.2
40
20
60
40
20
20
1.0 0.8 0.6
posterior probability
0.2
0.4
5 4 3
0.0 10
1.0 0.8 0.6 0.2
0.4
posterior probability
4 3
rate
0.0 10 5 -5
0
Bayes factors
0.8 0.6 0.4
-10 1.0 0.8 0.6
posterior probability
0.2
0.4
3 2
0.0 Bayes factors
10 5 0 -5 -10 1.0 0.8 0.6
posterior probability
0.4
2
0.0
0
0.2
80 60 40
rate
20
-5 0.4
0.2
0
0.8
0.6
0.4
0.2
0
1
0.8
0.6
0.4
0.2
0
0.6
0.4
0.2
10 5
1.0 0.8
10 6
0
2
-5
Bayes factors
0.8 0.6 0.4 0.2
6 -10
posterior probability
10
2
0.0 1
0
1
0.8
million years ago
0.6
0.4
0.2
0
1
0.8
million years ago
0.6
0.4
0.2
0
million years ago
0.6
0.4
0.2
0.6
0.4
0.2
0
0.2
0
0.8 0.6 0.4
0
0
0.6
0.4
0.2
0.4
0.2
0.8
0.2
0
0.4
0.2
0
extinction shift times 1.0
extinction rates
40 0.4
0.6
million years ago
0.8
10
0.6
2
0.6
10 0
100
6
0.8
0
Bayes factors
-5 -10
2 0.6
80
10
0
2
6
0.8
-5 0.8
6
million years ago
10
6
2
0.0
2
10
0.4
0.2
posterior probability
0.4
speciation Bayes factors
1.0 0.4
0.6
million years ago
0.8
posterior probability 0.6
0.2
0.2
0.8
6
10
0.0
0.0 0
0.0 0.8
0.4
5
1.0 rate
0.5
1.0
1.5
posterior probability
2.0
35 25 20
rate
15
0.2
0.6
100 40
0
0.4
speciation shift times
80 20
0.6
speciation rates
60 40
0.6
mass extinction Bayes factors
million years ago
rate 60
0.8
mass extinction times
million years ago
0
2
0
relative-extinction rates
0.8
20
6
0.2
net-diversification rates
10 0
10
0.6
0
0.2
0.4
million years ago
0.4
extinction shift times
0.4
0.6
million years ago
5 million years ago
0.6
posterior probability 0.8
million years ago
0 0.8
2
0.0
0 0.8
0.2
80
0
6
million years ago
30
10 0
2
60
rate
40 20
0.8
6
1.0
100 120
10 0 -5 2
10
0.8
0
2
0.6
0.2
extinction shift times
0.4
0.4
6
0.2
0.6
Bayes factors
0.8
6
extinction rates
10
10
0.6
posterior probability
1.0
speciation Bayes factors
5
speciation shift times
10
0
1.0 40
0.6
0.2
20
0.0 60
0.8
million years ago
-10 40
0.8
0
-10 0.0
1
-5
Bayes factors
5 0 -10
60
0.0
-10
0
2 1 1.0
0
extinction Bayes factors
0.2 60
1
0.8
0.6
0.4
0.2
0
0.8
0.6
0.4
0.2
0
60
40
20
million years ago
0
40
20
million years ago
0
20
0
60
40
20
million years ago
0
40
20
million years ago
0
0.8
0.6
0.4
0.2
million years ago
0
0.6
0.4
0.2
million years ago
0
0.8
0.6
0.4
0.2
million years ago
0
10
6
0
2
-5
Bayes factors
0.6
0.8
10
2 0.8
0.6
0.4
0.2
million years ago
0
-10
6
0.0
0.0 0.8
0.4
posterior probability
0.5
5 60
0
-10
-10
2
10
0.2
2.0 1.5 rate
1.0
25 20 15
rate
2
-5
0 -5
Bayes factors
0.6 0.2
40
million years ago
6
6
0.0 60
2
10
10
6
0
10
0.8 60
10
0.4
posterior probability
1.5 1.0 0.5
0.0
0.0
0.1
-5
0.2
rate
rate
2 0
2.0
0.5 0.4
6
0.3
10
5
million years ago
mass extinction Bayes factors
1.0
million years ago
mass extinction times
10
million years ago
relative-extinction rates
5
million years ago
net-diversification rates
Bayes factors
million years ago
extinction Bayes factors
10
million years ago
mass extinction Bayes factors
5
million years ago
mass extinction times 1.0
million years ago
relative-extinction rates
10
million years ago
net-diversification rates
5
million years ago
extinction Bayes factors
-10
Bayes factors
40
0
2.5 rate
2.0
0.6
6
-5
Bayes factors
0.6 0.4
0
0.2 0.0
0.0
60
CSiii
2
Bayes factors
0.8 0.6 0.4
posterior probability
0.2 0
0.8
5
10
1.0 2
0.2
10
0.8 6
0.4
million years ago
0.8
2
extinction rates
-5
Bayes factors
0.8 0.6 0.4
posterior probability
10
10
6
2 20
0.6
6
mass extinction Bayes factors
0
6
40
0.8
-10
20
mass extinction Bayes factors
million years ago
speciation Bayes factors
1
10
million years ago
80 40
million years ago
10
60
10
1.5 1.0 0.5
0
5
speciation shift times
rate
20
million years ago
1.0
speciation rates
40
0
extinction shift times
mass extinction times
40 2
0.4
million years ago
0.4
million years ago
1.0 0.6
6
60
mass extinction times
posterior probability 60
0.8
million years ago
relative-extinction rates
speciation rates 10
0.4
0
posterior probability
0
1
million years ago
million years ago
1.5
20
0.2
1.5
0
0.8 20
1.0
million years ago
40
0
net-diversification rates
2
-5 80
posterior probability 40
0.2
rate 60
0.4
extinction shift times
rate
0
0.8
million years ago
million years ago
0.5
20
0
40
0.4
6
-10
0
0.0
0.5 0.4 0.1 0.0
-10
60
0.6
5 20
million years ago
relative-extinction rates
0.2
0
rate
2
0.3
10 5
6
-5
Bayes factors
net-diversification rates
10
6
extinction Bayes factors
1
0.2 60
0.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5
extinction Bayes factors
0.8
0.5
10 5 0
1
10
-5
Bayes factors
0
2
10
0
0.2
0
2
2 1
extinction rates
6
5
20
0.4
million years ago
CS3
0.4
10
million years ago
10
0
40
million years ago
0.6
0
-10
60
40
0.0
rate
0
Bayes factors
0
2
0.8
Bayes factors
20
6
extinction rates
2
million years ago
0.8
6
0
-10
40
60
0.0 0.2 0.4 0.6 0.8 1.0 1.2 1.4
6
80 1
10
million years ago
10
40
0
2
0.0
20
6
0.4
80
-5 60
0.4
speciation Bayes factors
0.2
0
10
1.0 0.6 0.4
0
0.8
10
0.0
20
10
2
2 1
10
million years ago
25
40
-10
1.0 0.8 40
speciation Bayes factors
0.8 20
0.6 0.2
60
0.2 40
million years ago
2
million years ago
6
rate 1
6
0.0 80
0.0 60
10
0.4
posterior probability
2.5 0
speciation shift times
posterior probability
2.0 0.5 0.0 20
5
40
speciation rates 0.0 0.2 0.4 0.6 0.8 1.0 1.2 1.4
1.0
rate
0.2 0.1
rate
1.5
0.3
0.4
10 0 -10
0.0
60
million years ago
1
0
20
60
million years ago
80
rate
20 0 80
mass extinction Bayes factors
0
0.2 4
rate
0.10 0.00 0.4
15
0
rate
20
million years ago
20
6
0
1.0 0.30
4
0.8
10
40
mass extinction times
40
0.4
mass extinction Bayes factors
10
60
million years ago
60
0.8
mass extinction times
speciation shift times
60
0.8 0.6 0.4
posterior probability
0.2 0.0 80
relative-extinction rates
million years ago
1
relative-extinction rates
1.0
1.0
0
million years ago
2
0
net-diversification rates
5
20
net-diversification rates
6
10
million years ago
million years ago
2
million years ago
10
extinction shift times
million years ago
1
0
40
6
Bayes factors
60
10
0
million years ago
million years ago
0
speciation rates
1.2 0.8 rate
0.6 0.0
80
0.4
0.8 0.6 0.4 0.2
extinction shift times
0.4
0 -10
0
1
million years ago
million years ago
100 120
20
0.8
2
0
0 1
0
0
60
40
0.8 0.6 0.4 0.2
0.2 40
rate
60
6
0
2
-5 60
6
extinction rates 10
-5 0.4
2
million years ago
0.2 80
1
2
3
6
0.8
10
million years ago
0.8 0.4
extinction Bayes factors 10
2
0
speciation Bayes factors
2 1
20
0
0.8 0.6 0.4 0.2
6
0
-10 100 80
1.0
10
2
0.2 0.0 20
-5
Bayes factors
6
0
6
million years ago
0.6
posterior probability 0.4
10
0.0 1
0.2 0.8
rate
0 -10
0
extinction Bayes factors
80
rate
10
-5
Bayes factors
0.8 0.6 0.4
posterior probability
0.2 0.0
40
5
CS2
60
posterior probability
0.4 rate
0.2 0.1 0.0 0
10
million years ago
6
extinction rates
5
1.0 1.2 1.0 0.8 0.6 0.4
rate
80
0.8 0.6 0.4 0.2
MCMCTree
10
2
1
0.5 4 3 rate
1 0
0.8 0.6 0.4 0.2
0.0 1
10
million years ago
speciation Bayes factors
6
2
0
mass extinction Bayes factors
1
Bayes factors
3
0
2
2 60
0.8 0.6 0.4 0.2
mass extinction times
6
100 80
million years ago
speciation shift times
1
relative-extinction rates
PL speciation rates
0
net-diversification rates
1.0 20
-5
0
10 4
40
10
1.0 0.2 20
0.8 0.6 0.4 0.2
6
million years ago
speciation shift times
0
2 60
0.8 0.6
10
0.0
million years ago
40
1
10
million years ago
speciation rates
2
rate 6
100 80
0.4
posterior probability
0.3 0.2
rate
0.1 0.0
million years ago
60
0
million years ago
10
0
mass extinction Bayes factors
100 80
extinction shift times
million years ago
1
5
20
mass extinction times
0
0
0
40
0
million years ago
million years ago
1
0.2 60
relative-extinction rates
20
0.8 0.6 0.4 0.2
1.0
10
0.0 100 80
0
2
2
Bayes factors
-5 -10 1
net-diversification rates
40
5
10 5
0
million years ago
60
0
Bayes factors
0
20
million years ago
100 80
2
-10
40
million years ago
0.02
0
60
0.8
0.04 rate
0.01 0
6
extinction shift times
0.00 20
2
60
20
40
6
rate
40
60
10
6
1
10
million years ago
million years ago
0.00
-5 -10
60
0
Bayes factors
100 80
0.01
0
rate
2
100 80
2
0
0.04
6
100 80
posterior probability
0.05
6
0.03
10 5
extinction Bayes factors
20
0
5
million years ago
40
20
extinction rates
10
-10
2 60
40
million years ago
6
100 80
60
0.4
5 0.8 0.6 0.4 0.2
extinction Bayes factors
-5 100 80
-5
0.4
0
10
0.6
0
0.03
1.0 0.6
posterior probability 20
6
Bayes factors
20
speciation Bayes factors
10
0.2 40
10
0.6
40
0.8
million years ago
-5
0.4
10
Bayes factors
0.6
posterior probability 1
0.4
60
million years ago
1
0
0
2
2
0.0 100 80
0
extinction rates
10
1.0 20
0.8 0
0.0 60
0.4 0.2
20
0.8
0.05 0.04 0.03 0.02 0.01
rate
40
speciation shift times
0.00 100 80
Bayes factors
60
million years ago
0.4
mass extinction Bayes factors
0.02
100 80
speciation rates
CSiii
posterior probability
0.10
0
rate
speciation Bayes factors
0.8 40
6
10
20
2
speciation shift times
0.8
million years ago
5 60
million years ago
10
5
40
0.00
0.00 60
million years ago
0 1.0
speciation rates
2 100 80
1.0
0.30 0.20 rate
0.03 rate
0.02 0.01
0 -10 100 80
0.0
0.0
million years ago
6
0
mass extinction times
0.04
10 5
2
-5
Bayes factors
6
2 1
million years ago
2
6
0
million years ago
4
10
million years ago
relative-extinction rates
0.4
5
extinction shift times
20
6
0.8
40
0.8
0.6
60
10
million years ago
0.8 100 80
1
0.4
0
million years ago
net-diversification rates
10
0 0.3
3 2
rate
1 0
-10 20
million years ago
extinction Bayes factors
Bayes factors
0.4
4
10 5 0 -5
0 -5 -10
40
0
posterior probability
20
60
0.4
0.0
40
Bayes factors
10 Bayes factors
0.6
100
0.8
10
20
million years ago
60
mass extinction Bayes factors
0
100 80
mass extinction times
0.2
-10
0
relative-extinction rates
-10
20
net-diversification rates
0.0
40
million years ago
1
2
-5
million years ago
60
0
1.0 rate
2
million years ago
0
1
5
6
0
Bayes factors
0.6 0.4
2 100 80
20
extinction rates
6
0
40
10
10
1.0 20
60
million years ago
0.8 posterior probability
10
0.2 40
100
speciation Bayes factors
0.0 60
0.4
0
0.4
3
20
rate
40
0.8
0
60
million years ago
speciation shift times
0.00 0.01 0.02 0.03 0.04 0.05 100 80
5
posterior probability 100
million years ago
speciation rates
rate
0.2
0
0.6
20
1
0.4
40
2
posterior probability
60
6
0
million years ago
2
6
0.0
rate 100
million years ago
CS3
0.2 0.1 0.0
0.02
0
2
0.2
20
6
0.0
40
10
0.00 0.01 0.02 0.03 0.04 0.05
60
0.01
-10 100
0.00
0
rate
2
10
0.4
million years ago
10
0.8
0.4 0.3
0.03
5
6
-5
Bayes factors
0.04
10
10
1.0
extinction Bayes factors
0.8
0
million years ago
mass extinction Bayes factors
2 1
Bayes factors
million years ago
mass extinction times
6
0
-5
million years ago
relative-extinction rates
0.4
-10
million years ago
net-diversification rates
0.8
0.8
million years ago
10
5
million years ago
extinction Bayes factors
-10
0.0
0
0
1
0.6
20
0
0.4
40
0.4
posterior probability
60
0.8
0.2
100
1
0.2
-5
0.4
3
0
rate
20
1
0.2
40
0
0.1
60
0.6
posterior probability
4 100
rate 2 1
0.2 0.0
0
0.4
0.3
20
0.8
10
40
2 1
5
60
extinction shift times
6
0
0
100
0.8
1.0 0.8
0.03 rate
0.02 0.01 0.00
-10
0
0.4
Bayes factors
20
0.8
-10
40
1
0.20
60
2
2
10
100
6
5
0
6
10
0
20
10
extinction rates 10
1.0
40
0 -5
0.4 0.2
2
0.6
0.04
2
0.4
6
6
0.0 60
Bayes factors
0.6
posterior probability
10
speciation Bayes factors 10
speciation shift times
5
speciation rates
extinction shift times
posterior probability
10 5
1.0
10
0.8
0.04 0.03 rate
0.02 0.00 100
CS2
B
extinction rates
1.0
speciation Bayes factors
5
speciation shift times
0.01
A
MCMCTree
PL speciation rates
0.8
0.6
0.4
0.2
million years ago
0
0
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