Nicola Ternette, Marloes J. M. Olde Nordkamp, Julius Müller,. Amanda P. Anderson, Annalisa Nicastri, Adrian V. S. Hill, Benedikt M. Kessler and Demin Li.
These are not the final page numbers
PROTEOMICS Supporting Information for Proteomics DOI 10.1002/pmic.201700465 Nicola Ternette, Marloes J. M. Olde Nordkamp, Julius M¨ uller, Amanda P. Anderson, Annalisa Nicastri, Adrian V. S. Hill, Benedikt M. Kessler and Demin Li Immunopeptidomic Profiling of HLA-A2-Positive Triple Negative Breast Cancer Identifies Potential Immunotherapy Target Antigens
C
2018 The Authors. Proteomics Published by WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim
www.proteomics-journal.com
Figure 1. Supporting Information Figure S1
Patient 4
HLA-A2 positive sample
Patient 7
HLA-A2 negative sample
Patient 8
HLA-A2 positive sample with tumourial HLA-A2 downregulation
Supporting Information Figure S2 A
Length distribution 0.6
P1 N P1 T
0.4
B
Charge state 0.8 0.6
P1 N P1 T
Normal (N) 2.0
0.2
2.0
L V
L P
V I
A
R
D
0.0
0.6
0.8
2.0
0.4
0.6
P2 N P2 T
0.4 0.2
K
1
P3 N P3 T
0.4
0.6
P3 N P3 T
0.4 0.2
A
0.6
P4 N P4 T
0.4
0.6
1
P4 N P4 T
0.2
Y
L Y
7
I I ER E V S G P F T P N
8
9
V L
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9
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2
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peptide length [aa]
A
D Y
A H S V Q P
Q
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2.0
peptide charge [+e]
L
R
K
A
RV S A
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D P Q E Q H A D F S T HA RK A E A P D H M M M V G N E R R RN S S S Y F T
