*confirmation of the conection between 3' and 5' RACE fragment **RT-PCR was carried out to check fusion transcript using primer for HSF2BP exon 6 and H2BFS.
Supplementary Table S3 PCR primer sequence to identify the structures of retrocopy associated transcripts
99964481
ZNF322P1
20709315
UHRF1-r
91361574
PHKA1P1
Novel-r
Novel-r
90993802
TSD
58480319
EIF3FP3
NUS1P1
chimp
TSD
human TSD
90045604-90049082
human
90990738
59434469-59438326
chimp 58476566
TSD
82402978
TSD
Chr. 21
human
44983061
TSD
Chr. 2
TSD
Chr. 14
RPL18AP3
EIF3FP3
chimp
91650884-91652881
human TSD
104659882
TSD
Chr. 1
91354714
human
RPS28P7
H2BFS
chimp 104657048
human
82399073
TSD
Chr. 12
TSD
PHKA1P1
108291998
TSD
44988086
H2BFS
TSD
AK4P3
chimp
TSD
Chr. 11
TSD
RPL18AP3
chimp
human
20703329
human RALGAPA1P
TSD
RPS28P7
chimp
TSD
104574989-104576435
Chr. 12
20921974-20924917
chimp
108280022
TSD
UHRF1-r
Chr. 9
104410387--104414373
chimp
human
TSD
chimp
RALGAPA1P
149703166
TMEM183A-r
TSD
2A: 59109711-59112015
chimp
95976492:95980593:1
Chr. 9
human
149697451
TSD
80601884-80605067
TSD
111906671
C1orf106-r
Chr. 14
29561532-29583420
TSD
ZNF322P1
99955562
human
111900295
168058487
TMEM183A-r
Chr. 12
human
31611275
TSD
31617393
AK4P3
TSD
Chr. X
48012905-48014983
TSD
GCSHP5
Chr. 3
56816390-56820003
chimp
human
168054773
chimp
C1orf106-r 115503829-115507544
Chr. 1
146430201-146432753
chimp
GCSHP5
47368157
TSD
human NUS1P1
47373982
TSD
Supplementary Figure S1 Dot plot analyses between human (x-axis) and chimp (y-axis) indicate human-specific retrocopy insertions. The chromosome positions are based on GRCh37 and CHIMP2.1.4. The arrowheads indicate the target site duplication (TSD) sequences flanking the insertion sites.