Supplementary Table 4. List of 108 unrelated rhesus macaque ... - PLOS

Supplementary Table 4. List of 108 unrelated rhesus macaque samples whole genome data was used in this work NCBI SRA Accession SAMN03264739 SAMN03264740 SAMN03264732 SAMN03264736 SAMN03264738 SAMN03264734 SAMN03264735 SAMN03264737 SAMN03264733 SAMN03264762 SAMN03264763 SAMN03264767 SAMN03264768 SAMN03264775 SAMN03264779 SAMN03264676 SAMN03264677 SAMN03264678 SAMN03264679 SAMN03264681 SAMN03264683 SAMN03264695 SAMN03264696 SAMN03264697 SAMN03264699 SAMN03264700 SAMN03264702 SAMN03264703 SAMN03264725 SAMN03264726 SAMN03264727 SAMN03264716 SAMN03264718

Ancestry

Sex

Sequence Coverage

Chinese

F

11.5

Chinese

F

8.6

Indian

M

9.7

Indian

F

10.7

Chinese

M

9.4

Indian

F

10.3

Indian

F

9.8

Indian

F

9.9

Indian

F

10.8

Caribbean Primate Research Center

Indian

F

9.2

Caribbean Primate Research Center

Indian

F

8.4

Caribbean Primate Research Center

Indian

F

9

Caribbean Primate Research Center

Indian

F

8.3

Caribbean Primate Research Center

Indian

M

8.7

Caribbean Primate Research Center

Indian

F

7.9

New England Primate Research Center

Indian

F

7.7

New England Primate Research Center

Indian

F

11

New England Primate Research Center

Indian

F

7.9

New England Primate Research Center

Indian

M

7

New England Primate Research Center

Indian

F

10.3

New England Primate Research Center

Indian

F

10.3

Oregon National Primate Research Center

Indian

F

9.6

Oregon National Primate Research Center

Indian

F

11.3

Oregon National Primate Research Center

Indian

F

11.6

Oregon National Primate Research Center

Indian

F

9.4

Oregon National Primate Research Center

Indian

F

8.5

Oregon National Primate Research Center

Indian

F

11.4

Oregon National Primate Research Center

Indian

F

8.4

Indian

F

10.2

Indian

M

7.3

Indian

F

8.4

Tulane National Primate Research Center

Indian

F

10.6

Tulane National Primate Research Center

Indian

M

8.6

Sample Name

Colony source of sample

MMUL.CH36390 MMUL.CH36394 MMUL.IN36332 MMUL.IN36371 MMUL.CH36389 MMUL.IN36357 MMUL.IN36359 MMUL.IN36374 MMUL.IN36355 MMUL.IN36460 MMUL.IN36467 MMUL.IN36477 MMUL.IN36476 MMUL.IN36474 MMUL.IN36466 MMUL.IN35250 MMUL.IN35252 MMUL.IN35253 MMUL.IN35254 MMUL.IN35256 MMUL.IN35259 MMUL.IN35717 MMUL.IN35718 MMUL.IN35722 MMUL.IN35724 MMUL.IN35728 MMUL.IN35730 MMUL.IN35732 MMUL.IN35969 MMUL.IN35972 MMUL.IN35975 MMUL.IN35895 MMUL.IN35907

California National Primate Research Center California National Primate Research Center California National Primate Research Center California National Primate Research Center California National Primate Research Center California National Primate Research Center California National Primate Research Center California National Primate Research Center California National Primate Research Center

Southwest National Primate Research Center Southwest National Primate Research Center Southwest National Primate Research Center

SAMN03264719 SAMN03264721 SAMN03264722 SAMN03264724 SAMN03264715 SAMN03264717 SAMN03264720 SAMN03264605 SAMN03264606 SAMN03264607 SAMN03264608 SAMN03264609 SAMN03264610 SAMN03264618 SAMN03264619 SAMN03264685 SAMN03264689 SAMN03264694 SAMN03264597 SAMN03264598 SAMN03264600 SAMN03264613 SAMN03264614 SAMN03264620 SAMN03264621 SAMN03264623 SAMN03264629 SAMN03264630 SAMN03264635 SAMN03264639 SAMN03264641 SAMN03264642 SAMN03264643 SAMN03264645 SAMN03264646 SAMN03264649 SAMN03264650

MMUL.IN35916 MMUL.IN35921 MMUL.IN35923 MMUL.IN35957 MMUL.IN35883 MMUL.IN35902 MMUL.IN35919 MMUL.IN28499 MMUL.IN28500 MMUL.IN28507 MMUL.IN28518 MMUL.IN28535 MMUL.IN28555 MMUL.IN30423 MMUL.IN30424 MMUL.IN35490 MMUL.IN35496 MMUL.IN35502 MMUL.IN18277 MMUL.IN19466 MMUL.IN24898 MMUL.IN30119 MMUL.IN30136 MMUL.IN31505 MMUL.IN32510 MMUL.IN32754 MMUL.IN34600 MMUL.IN34602 MMUL.IN34762 MMUL.IN34770 MMUL.IN35044 MMUL.IN35045 MMUL.IN35046 MMUL.IN35048 MMUL.IN35049 MMUL.IN35055 MMUL.IN35059

Tulane National Primate Research Center

Indian

F

10.9

Tulane National Primate Research Center

Indian

F

10

Tulane National Primate Research Center

Indian

F

7.2

Tulane National Primate Research Center

Indian

F

9.7

Tulane National Primate Research Center

Indian

M

8

Tulane National Primate Research Center

Indian

M

7.7

Tulane National Primate Research Center

Indian

F

7.5

Indian

M

11.3

Indian

F

9.5

Indian

M

10.5

Indian

F

10.3

Indian

M

7.9

Indian

M

7.6

Indian

F

9.6

Indian

M

10.6

Yerkes National Primate Research Center

Indian

F

11.4

Yerkes National Primate Research Center

Indian

F

11.5

Yerkes National Primate Research Center

Indian

F

8.9

Yerkes National Primate Research Center

Indian

F

35.8

Yerkes National Primate Research Center

Indian

M

36.2

Indian

F

39.4

Indian

F

35.9

Indian

M

29.9

Indian

F

36.5

Indian

F

25.6

Indian

F

27.7

New England Primate Research Center

Indian

M

32.1

New England Primate Research Center

Indian

M

35

Yerkes National Primate Research Center

Indian

F

38.2

Yerkes National Primate Research Center

Indian

F

37.3

Oregon National Primate Research Center

Indian

M

36.2

Oregon National Primate Research Center

Indian

M

60.7

Oregon National Primate Research Center

Indian

M

34.2

Oregon National Primate Research Center

Indian

M

40

Oregon National Primate Research Center

Indian

M

42.7

Oregon National Primate Research Center

Indian

F

32.6

Oregon National Primate Research Center

Indian

M

37.2

Wisconsin National Primate Research Center Wisconsin National Primate Research Center Wisconsin National Primate Research Center Wisconsin National Primate Research Center Wisconsin National Primate Research Center Wisconsin National Primate Research Center Wisconsin National Primate Research Center Wisconsin National Primate Research Center

Wisconsin National Primate Research Center Wisconsin National Primate Research Center Wisconsin National Primate Research Center Wisconsin National Primate Research Center Wisconsin National Primate Research Center Wisconsin National Primate Research Center

SAMN03264651 SAMN03264652 SAMN03264653 SAMN03264658 SAMN03264666 SAMN03264667 SAMN03264672 SAMN03264674 SAMN03264705 SAMN03264706 SAMN03264707 SAMN03264708 SAMN03264709 SAMN03264710 SAMN03264711 SAMN03264712 SAMN03264728 SAMN03264729 SAMN03264730 SAMN03264761 SAMN03083651 SAMN03264769 SAMN03264770 SAMN03264771 SAMN03264774 SAMN03264780 SAMN03264781 SAMN03264764 SAMN03264765 SAMN03264743 SAMN03264744 SAMN03264746 SAMN03264749 SAMN03264750 SAMN03264751 SAMN03264756 SAMN03264757

MMUL.IN35060 MMUL.IN35061 MMUL.CH35082 MMUL.IN35087 MMUL.IN35095 MMUL.IN35096 MMUL.IN35154 MMUL.IN35162 MMUL.IN35864 MMUL.IN35865 MMUL.IN35866 MMUL.IN35868 MMUL.IN35871 MMUL.IN35872 MMUL.IN35873 MMUL.IN35874 MMUL.IN35976 MMUL.IN35990 MMUL.CH36013 MMUL.IN39345 MMUL.IN36468 MMUL.IN36461 MMUL.IN36462 MMUL.IN36463 MMUL.IN36473 MMUL.IN36471 MMUL.IN36470 MMUL.IN11414-01b MMUL.IN11433-07b MMUL.IN37732 MMUL.IN37733 MMUL.IN37735 MMUL.IN37738 MMUL.IN37739 MMUL.IN37740 MMUL.IN37745 MMUL.IN37746

Oregon National Primate Research Center

Indian

M

41.2

Oregon National Primate Research Center

Indian

M

40.8

Chinese

F

45.7

Indian

F

30.3

Indian

M

36.1

Indian

F

35.8

New England Primate Research Center

Indian

M

33.5

New England Primate Research Center

Indian

M

32.5

Tulane National Primate Research Center

Indian

M

32.7

Tulane National Primate Research Center

Indian

M

41

Tulane National Primate Research Center

Indian

F

41

Tulane National Primate Research Center

Indian

F

34.7

Tulane National Primate Research Center

Indian

M

39.1

Tulane National Primate Research Center

Indian

F

39.2

Tulane National Primate Research Center

Indian

M

42.7

Tulane National Primate Research Center

Indian

M

37.8

Indian

F

41.1

Indian

M

38.2

Chinese

F

41

Indian

F

42

Caribbean Primate Research Center

Indian

F

40.4

Caribbean Primate Research Center

Indian

M

41.1

Caribbean Primate Research Center

Indian

M

38.2

Caribbean Primate Research Center

Indian

M

39.1

Caribbean Primate Research Center

Indian

M

42.3

Caribbean Primate Research Center

Indian

F

40.9

Caribbean Primate Research Center

Indian

F

40.3

Wisconsin National Primate Research Center

Indian

F

34.5

Indian

F

53.3

Indian

F

44

Indian

F

42.5

Indian

M

41.3

Indian

F

38.8

Indian

M

40.7

Indian

M

41.6

Indian

F

39.6

Indian

F

38.6

California National Primate Research Center California National Primate Research Center California National Primate Research Center California National Primate Research Center

Southwest National Primate Research Center Southwest National Primate Research Center California National Primate Research Center California National Primate Research Center

Wisconsin National Primate Research Center Wisconsin National Primate Research Center Wisconsin National Primate Research Center Wisconsin National Primate Research Center Wisconsin National Primate Research Center Wisconsin National Primate Research Center Wisconsin National Primate Research Center Wisconsin National Primate Research Center Wisconsin National Primate Research Center

SAMN03264760

MMUL.CH37950

Wild Caught

Chinese

F

29.6